Unit 2 · Practice for the Topic 2.9 end-of-topic test
In the storage cells of a sprouting bean seed, digestive enzymes sit inside small membrane-bound bodies together with stored protein. The interior of each body is acidic; the cytosol around it is close to neutral. The enzymes cut stored protein quickly in acid and barely at all at the cytosol's acidity.
What lets the enzymes work inside the bodies and hardly at all in the cytosol around them?
Engineers design an artificial cell: a single outer membrane filled with fluid. They consider four ways of arranging its contents.
Which arrangement gives the artificial cell compartmentalization?
Cells of a mustard leaf make a bitter compound that damages a plant's protein-building machinery when it meets it. The cells store the compound inside their central vacuoles, while ribosomes in the cytosol build new proteins all day.
Why does the cell benefit from storing the compound in the vacuole?
A treatment makes the vacuole membrane of those mustard leaf cells leaky, so the bitter compound spreads into the cytosol. Nothing else in the cell is changed.
Predict the effect on protein building in the cytosol.
The flight muscle cells of a hummingbird hold mitochondria whose inner membranes are folded far more than those in a chicken's breast muscle cells. The reactions that make ATP run on the inner membrane. The two kinds of mitochondria are about the same size.
What do the extra folds do for the hummingbird's muscle cells?
Cells lining the gut that take in fat from food have far more smooth ER membrane than their neighbors. The reactions that rebuild absorbed fat into fats the body can use run on the membranes of the smooth ER.
What does the extra ER membrane do for these cells?
In many plant cells the central vacuole is acidic while the cytosol is close to neutral, and the reactions that run in the cytosol work best close to neutral. A treatment makes the vacuole's membrane leaky to acid.
Predict the effect on the reactions in the cytosol.
A treatment fuses a cell's lysosomes with its mitochondria, so each merged compartment holds the lysosome's acidic interior and digestive enzymes together with the mitochondrion's inner membrane, where the ATP-making reactions run. Those reactions work well only in conditions close to neutral.
Predict the effect on how fast the cell makes ATP.
The figure shows one compartment inside a cell, before and after a treatment. Substance Y is needed at 10 mmol/L or more by a reaction that runs inside the compartment. Before the treatment Y is at 30 mmol/L inside the compartment and 0.3 mmol/L in the cytosol; afterward it is at 1.2 mmol/L in both.
What did the treatment most likely do, and what follows for the reaction?
(a) Identify the compartment used in design B, and describe the condition its membrane holds inside it. (1 point)
A full-credit answer: Design B uses the vacuole, whose membrane keeps the inside acidic while the cytosol around it stays close to neutral.
Check the box for each point your answer earns
Both the compartment and the condition held are needed for the point.
Common slip: Naming the vacuole without saying what its membrane holds inside. The acidic interior is the point.
(b) Explain why enzyme 1 makes more J in design B than in design A. (1 point)
A full-credit answer: Enzyme 1 works best in acidic conditions. In design B it sits inside the vacuole, whose membrane keeps the interior acidic, so it works at its best; in design A it sits in the cytosol, which is close to neutral, so it works slowly.
Check the box for each point your answer earns
Accept: 'the vacuole's membrane gives enzyme 1 the acid it needs; the cytosol does not'.
Common slip: Saying the vacuole 'protects' enzyme 1 with no mention of acidity. It is the acidic conditions the membrane holds that matter.
(c) Explain why the cells grow normally in design B but slowly in design A. (1 point)
A full-credit answer: In design A, J forms in the cytosol, where the ribosomes are, and damages them, so protein building and growth slow. In design B, J forms inside the vacuole, away from the ribosomes, and the J that leaks out slowly is turned into Q by enzyme 2 in the cytosol, so little of it ever reaches the ribosomes.
Check the box for each point your answer earns
Accept: 'the vacuole membrane keeps J apart from the ribosomes'. Do not award the point for 'the cells have more Q' with no mention of J and the ribosomes.
Common slip: Explaining the growth from the amount of Q. Growth depends on the ribosomes, and the question is whether J reaches them.
(d) Predict the yield of Q from a design C: enzyme 1 in the vacuole and enzyme 2 in the cytosol, as in design B, but with a vacuole membrane that blocks J completely. (1 point)
A full-credit answer: Design C would give almost no Q, less even than design A's 6 units, because the J that enzyme 1 makes stays trapped in the vacuole and enzyme 2 in the cytosol never receives any.
Check the box for each point your answer earns
Do not award a prediction near design B's 48 units, or one equal to design A.
Common slip: Predicting a yield near 48 units because the acidity is right. Right conditions do nothing for enzyme 2 if J never reaches it.
(e) Justify your prediction, using what the vacuole's membrane must hold in and what it must let through for this process to work. (1 point)
A full-credit answer: For the process to work, the membrane must hold in the acid, so that enzyme 1 works, and let J through to the cytosol, where enzyme 2 turns it into Q. Design C's membrane holds the acid but traps J, so enzyme 2 receives none and no Q forms, however well enzyme 1 works. Design B gave 48 units only because J could pass out of the vacuole.
Check the box for each point your answer earns
Accept: reasoning that cites design B's yield as depending on J passing out of the vacuole. Do not award the point for a justification from acidity alone.
Common slip: Justifying from acidity alone. A compartment helps only if what the next step needs can still get through.
(a) Describe what the vacuole's membrane does for the cell, in terms of the conditions it holds inside and what it keeps apart. (1 point)
A full-credit answer: The vacuole's membrane keeps the inside acidic and holds the compound at 80 mmol/L while the cytosol has only 0.2 mmol/L, and it keeps the compound apart from the ribosomes in the cytosol, which it would stop.
Check the box for each point your answer earns
Both halves, the conditions held and what is kept apart, are needed for the point.
Common slip: Saying the membrane 'holds the contents in place'. Name the conditions it holds and the thing it keeps the compound away from.
(b) Explain how the membrane makes possible a concentration of 80 mmol/L inside the vacuole beside 0.2 mmol/L in the cytosol. (1 point)
A full-credit answer: Dissolved particles move at random and spread out, so the compound could stay 400 times more concentrated inside the vacuole only because the membrane does not let it diffuse freely across. Without the membrane, diffusion would even the two sides out.
Check the box for each point your answer earns
Accept: 'a gradient can exist across a membrane only for a substance the membrane blocks'. Do not award the point for 'the vacuole is where it is made' with no reference to the membrane blocking diffusion.
Common slip: Saying the compound is concentrated because it is made in the vacuole. Whatever makes it, only a membrane that blocks it keeps it from spreading.
(c) Predict the effect on the ribosomes at feature 3 if a treatment dissolves the vacuole's membrane, and justify your prediction. (1 point)
A full-credit answer: The ribosomes slow or stop building proteins. With the membrane gone, the compound spreads out of the vacuole by diffusion into the cytosol, reaches the ribosomes and stops them, and the acid spreading out makes the cytosol acidic as well.
Check the box for each point your answer earns
Accept either the compound or the acid as the agent, provided it is said to reach the ribosomes. Do not award the point for 'nothing changes' or for a prediction with no justification.
Common slip: Predicting no change because the ribosomes themselves are untouched. Their surroundings change: what the membrane held in now reaches them.
(d) Explain how feature 2 shows a third benefit of internal membranes, different from the two in part (a). (1 point)
A full-credit answer: The mitochondrion's inner membrane is folded, which fits far more membrane into the same space. The ATP-making reactions run on that membrane, so more of them run at the same time: internal membranes add surface for reactions, as well as holding conditions and keeping things apart.
Check the box for each point your answer earns
Accept: 'more surface area for membrane-bound reactions' with the link to more reactions at once or faster ATP-making.
Common slip: Saying the folds store energy or let fuel in. They add surface for the reactions that make ATP.