Unit 3 · Topic 3.3 end-of-topic test
Suggested time: about 51 minutes. Answer everything, then press Submit the test to see the feedback and scoring guides.
The figure shows an ATP molecule with two regions marked, 1 and 2.
Which marked region is adenosine?
A cell hydrolyzes a molecule of ATP.
How does the ADP that is left differ from the ATP?
A grasshopper's jumping muscle hydrolyzes ATP each time it contracts. With no ATP, the muscle locks stiff.
Where does the energy for the contraction come from?
The figure shows an energy profile for ATP hydrolysis, ATP + H₂O → ADP + Pi. Energy is in kJ/mol.
What does the profile show about the reaction?
A membrane protein moves a solute into a vesicle against its concentration gradient. A researcher gives the protein ADP plus Pi, and then a look-alike of ATP that binds the protein's ATP site but cannot be hydrolyzed: each time, the solute stays outside. Given ATP, the protein moves the solute into the vesicle.
What do the results show about how the protein uses ATP?
A pump in a plant root cell's membrane pushes hydrogen ions (H⁺) out of the cell against their concentration gradient. When the pump hydrolyzes ATP, the pump becomes phosphorylated.
What does the added phosphate do to the pump?
A researcher gives a muscle a poison. The muscle contracts normally for a few seconds and then stops. By then its ATP is gone, and ADP and Pi have built up. The muscle goes on breaking glucose down as before.
Which reaction has the poison blocked?
During a 30-second race a greyhound's leg muscles hydrolyze ATP very fast, yet the amount of ATP in the muscles barely falls over the 30 seconds.
Which of the following explains why the amount of ATP barely falls?
A goldfish is kept in a brightly lit tank and given no food. Over several weeks it grows thin and dies.
Why does the goldfish die in spite of the light?
In one day a seaweed frond absorbs 1,200 kJ of light energy and stores about 50 kJ of it in the sugar it makes.
What happened to the other 1,150 kJ?
A student writes: 'Plants are producers because they make their own energy from sunlight.'
Which statement corrects the student?
In an hour of flight, a pigeon's breast muscles transfer 90 kJ of energy from the fuel they break down. About 30 kJ of that energy is captured in ATP.
What happens to the other 60 kJ?
A fallen tree trunk lying on the ground in a wood softens, crumbles and scatters over the years. The living tree beside it keeps its shape, its molecules built and rebuilt every day.
Which of the following ideas from the second law of thermodynamics does the fallen trunk show?
A sperm cell carries no food store of its own. In a dish with no sugar it swims for a few hours; then its ion concentration gradients collapse, its membrane leaks and it dies.
Why does the sperm cell die?
A male emperor penguin stands through the Antarctic winter holding an egg and eats nothing for two months. It uses up its stored fat, then begins to break down its own muscle protein.
Why does the penguin break down its own tissues?
The figure shows a metabolic pathway in which G is converted, step by step, to K.
Which molecule is both the product of enzyme E2's reaction and the reactant of enzyme E3's reaction?
In the pathway shown, a cell loses the ability to make enzyme E2. E1 and E3 are unchanged, and G keeps arriving.
What happens to the amounts of the pathway's molecules?
A log burns in a fireplace in one blaze of heat and light. A fungus breaks the same kind of wood down in dozens of small enzyme-catalyzed steps, releasing the same energy from the same amount of wood.
What is the advantage to the fungus of the many small steps?
Four molecules are found in a potato cell: starch, oxygen (O₂), carbon dioxide (CO₂) and water (H₂O).
Which of the four is an organic molecule?
(a) Calculate the percentage of the 300 J that was captured in ATP. (1 point)
A full-credit answer: 120 J of the 300 J transferred ended up in ATP.
120 ÷ 300 × 100 = 40%.
So the sprout captured 40% of the transferred energy in ATP.
energy transferred from starch = 300 J
energy captured in ATP = 120 J
Check the box for each point your answer earns
Do not award the point for 120 divided by 180 (67%, comparing ATP with heat) or for 180 divided by 300 (60%, the share that left as heat).
Common slip: Dividing 120 by 180 instead of by 300. The whole is the 300 J transferred from the starch. The heat is the other part of that whole, not the whole.
(b) Describe how the first law of thermodynamics accounts for the 300 J. (1 point)
A full-credit answer: The first law of thermodynamics says that energy is never created or destroyed.
Energy is only transferred or transformed.
So every joule of the 300 J is accounted for.
120 J was captured in ATP.
180 J left the tuber as heat.
120 J + 180 J = 300 J.
Check the box for each point your answer earns
Accept "the energy in equals the energy out". Accept "180 J was lost as heat (to the surroundings)": that is the exam's own wording, and the heat still exists. Do not award the point for a statement that energy was destroyed, disappeared or ceased to exist.
Common slip: Saying that the 180 J of heat was destroyed or ceased to exist. The heat left the tuber, but it still exists; the first law of thermodynamics counts it. Saying it was "lost as heat" is fine: that is the exam's own wording.
(c) Explain why only part of the energy transferred from the starch ended up in ATP. (1 point)
A full-credit answer: Every energy transfer spreads some energy out as heat.
That heat can no longer do work.
So no transfer is fully efficient.
This is the second law of thermodynamics.
The sprout breaks the tuber's starch down in many small steps.
Each step captures part of the energy released in ATP.
The rest, here 180 J of the 300 J, warms the tuber and its surroundings.
Check the box for each point your answer earns
Accept an answer that names the second law of thermodynamics and heat without mentioning the steps. Do not award the point for "the sprout wasted energy" with no mention of heat, or for "some energy was destroyed".
Common slip: Saying the sprout "could not use" the 180 J and stopping. The point needs the idea of the second law of thermodynamics: some energy spreads out as heat at every transfer, so no transfer is fully efficient.
(d) Explain what happens to the ion concentration gradients across the sprout's cell membranes once the tuber's starch is used up. (1 point)
A full-credit answer: Once the starch is used up, the sprout has no energy input.
It has no food left, and in the dark it has no light.
So it can no longer remake ATP.
The pumps in its cell membranes work only while ATP hydrolysis is coupled to their pumping.
So the pumps stop.
Ions then leak across the membranes until the concentrations on the two sides even out.
So the ion concentration gradients collapse.
Check the box for each point your answer earns
Accept "the concentration gradients collapse" or "disappear" with the no-ATP reason. Do not award the point for "the concentration gradients collapse" alone, or for an answer in which the sprout keeps its concentration gradients by living on light it is not receiving.
Common slip: Saying only that the concentration gradients collapse. The point needs the chain that gets there: no input, no ATP, no pumping, ions leak until the concentrations even out.
(e) A student claims that the sprout could keep its cells ordered by gathering back the heat it gave off. Evaluate the student's claim. (1 point)
A full-credit answer: The claim fails.
The heat the sprout gave off spread into the air of the cupboard.
Heat that has spread out cannot be gathered back to do work: the second law of thermodynamics.
Keeping cells ordered needs energy every moment.
Heat leaves at every step, and none comes back.
So a living thing must keep taking in energy.
In the dark, with the starch gone, the sprout has no input.
So its order cannot be kept.
Check the box for each point your answer earns
Accept an evaluation built on "heat that has spread out cannot be used again" together with "order has to be supplied with energy continuously". Do not award the point for rejecting the claim with no reason, or for an evaluation that has the sprout creating energy from its own tissues.
Common slip: Rejecting the claim because “the heat is gone” and stopping. The point needs the reason: heat that has spread out cannot do work again, so order has to be supplied with fresh energy continuously.
(a) Describe what happens to the ATP molecule in arrow 1. (1 point)
A full-credit answer: In arrow 1, ATP reacts with water.
This reaction is ATP hydrolysis.
Water splits the outermost of ATP's three phosphate groups off.
ADP is left: adenosine with two phosphates.
The phosphate that came off is free inorganic phosphate, Pi.
The reaction releases energy.
Check the box for each point your answer earns
Accept "water splits the outer phosphate off ATP". Naming the reaction hydrolysis may be counted toward the description but is not required. Do not award the point for "ATP becomes ADP and Pi" alone, which the figure shows, or for ATP described as losing all three phosphates.
Common slip: Reading the figure back: "ATP becomes ADP and Pi". The point needs what happens to the molecule: water removes the outermost of the three phosphates.
(b) Explain why the reaction in arrow 1 releases energy that the pump can use. (1 point)
A full-credit answer: The products, ADP and inorganic phosphate, hold less energy than the reactants, ATP and water.
So the reaction as a whole releases energy.
The pump can use that energy only because the hydrolysis is coupled to its work.
The pump takes the outer phosphate onto itself: the pump is phosphorylated.
The added phosphate changes the pump's shape.
In its new shape, the pump pushes Ca²⁺ out of the cytosol.
Check the box for each point your answer earns
Accept "the products sit lower in energy than the reactants" for the source. Do not award the point for "energy stored in the high-energy phosphate bond is released when the bond breaks".
Common slip: Saying energy was stored in the bond to the outer phosphate and came out when the bond broke. Breaking a bond takes energy in. The release comes from the whole reaction: its products hold less energy than its reactants.
(c) Represent arrow 2 as an equation, in words or symbols, showing what goes in and what comes out. (1 point)
A full-credit answer: Arrow 2: ADP + Pi + energy → ATP + H₂O.
Arrow 2 is the reverse of hydrolysis.
ATP and water hold more energy than ADP and Pi.
So remaking ATP needs an input of energy.
The cell supplies that energy from the food it breaks down.
Check the box for each point your answer earns
Accept the equation without water, and accept "energy from food" as the energy term. Do not award the point for an equation with no energy input, or for one with energy shown coming out.
Common slip: Writing the equation with no energy term. Arrow 2 needs an input of energy; without the energy from food it does not happen.
(d) Explain, using the model and the result of the look-alike experiment, why the cell must keep taking in energy. (1 point)
A full-credit answer: The look-alike binds the pump but is never hydrolyzed.
So no energy is released, and nothing drives the pump's change of shape.
So the pump stops: the hydrolysis itself drives the work.
A cell holds only seconds' worth of ATP.
So it must remake ATP (arrow 2) all the time, with energy from food.
The pump keeps the cell's calcium concentration gradient, part of its order.
So the cell stays ordered only while energy from food keeps flowing in.
Check the box for each point your answer earns
Accept an answer that links the pump stopping to "no hydrolysis, no energy" and the cycle to "ATP must be remade from food all the time". Do not award the point for restating that the pump stopped, or for treating ATP as a long-term store of energy.
Common slip: Stopping at "the pump stops because the look-alike is not ATP". The point needs the chain: no hydrolysis, no energy released, no coupled shape change; and then why the cell must keep remaking ATP from food.