Unit 3 · Topic 3.3 end-of-topic test
The figure shows an ATP molecule with two regions marked, 1 and 2.
Which region of the figure is adenosine, and what does it consist of?
A cell hydrolyzes a molecule of ATP.
How does the ADP that is left differ from the ATP?
A firefly's light organ hydrolyzes ATP to power each flash of light. With no ATP, the organ stays dark.
Where does the energy for the flash come from?
On an energy profile for ATP hydrolysis, drawn in relative units, the reactants (ATP + H₂O) sit at 100 and the products (ADP + Pi) at 70. There is a hump between them, as in any reaction.
What does the profile say about the reaction?
A membrane protein moves a solute into a vesicle against its concentration gradient. Researchers tested it with ATP, with ADP plus Pi, and with a look-alike of ATP that binds the protein's ATP site but cannot be hydrolyzed. The solute accumulated inside only when real ATP was present.
What do the results show about how the protein uses ATP?
When the sodium–potassium pump hydrolyzes ATP, the outer phosphate group is transferred onto the pump protein itself: the pump is phosphorylated.
What does the added phosphate do to the pump?
A muscle is given a poison that stops it from remaking ATP. It contracts normally for a few seconds and then stops, although its contracting proteins are undamaged.
Why does the muscle stop?
During a ten-second sprint a runner's leg muscles use ATP at about 100 units per second, yet the amount of ATP in the muscle barely falls over the ten seconds.
How is this possible?
A seedling germinated in total darkness grows for about a week and then dies. An identical seedling in the light keeps growing.
Why does the dark seedling die?
In one afternoon a leaf absorbs 900 kJ of light energy and stores about 40 kJ of it in the sugar it makes.
What happened to the other 860 kJ?
A student writes: 'Plants are producers because they make their own energy from sunlight.'
Which statement corrects the student?
As a cell breaks down glucose, about a third of the energy released ends up in ATP.
What happens to the rest of the energy?
A dead leaf on the ground crumbles and scatters over a few weeks. The living leaf on the tree keeps its shape, its molecules built and rebuilt every day.
Which idea from the second law of thermodynamics does the dead leaf show?
A poison blocks a cell's ability to make ATP. Within hours the cell's ion gradients run down, its membranes leak and it dies.
Why does the cell die?
An animal that stops eating first uses up its stored fat, then breaks down its own muscle proteins, and eventually dies.
Why does the animal break down its own tissues?
The figure shows a metabolic pathway in which W is converted, step by step, to Z.
Which molecule is both the product of enzyme E2's reaction and the reactant of enzyme E3's reaction?
In the pathway shown, a cell loses the ability to make enzyme E2. E1 and E3 are unchanged, and W keeps arriving.
What happens to the amounts of the pathway's molecules?
A spoonful of sugar held in a flame burns in one flash of heat and light. A cell releases the same energy from the same amount of sugar in dozens of small enzyme-catalyzed steps.
What is the advantage of the many small steps?
(a) Describe what the first law of thermodynamics says about the 250 J, and calculate the percentage of it that was captured in ATP. (1 point)
A full-credit answer: The first law says energy is never created or destroyed, only transferred or transformed, so every joule of the 250 J is accounted for: 100 J in ATP and 150 J as heat, 250 J in all. The seed captured 40% of the transferred energy in ATP.
Write down the values in the question:
energy transferred from starch = 250 J energy captured in ATP = 100 J energy released as heat = 150 J
Write down the equation:
energy in ATP
percentage in ATP = ──────────────────── × 100
energy transferredSubstitute in the values, and calculate:
percentage in ATP = (100 ÷ 250) × 100 percentage in ATP = 40% check: 100 J + 150 J = 250 J, all accounted for
Check the box for each point your answer earns
Accept "the energy in equals the energy out" for the first law. Do not award the point for 40% alone with no statement of the law, or for a statement that energy was used up or lost.
Common slip: Describing the 150 J of heat as energy that was "lost" or "used up". It left the seed, but it still exists; the first law counts it.
(b) Explain why only part of the energy transferred from the starch ended up in ATP. (1 point)
A full-credit answer: Every energy transfer spreads some energy out as heat that can no longer do work, so no transfer is fully efficient; that is the second law of thermodynamics. As the seed breaks its starch down in many small steps, each step captures part of the energy released in ATP and the rest, here 150 J of the 250 J, warms the seed and its surroundings.
Check the box for each point your answer earns
Accept an answer that names the second law and heat without mentioning the steps. Do not award the point for "the seed wasted energy" with no mention of heat, or for "some energy was destroyed".
Common slip: Saying the seed "could not use" the 150 J and stopping. The point needs the second law's idea: some energy spreads out as heat at every transfer, so no transfer is fully efficient.
(c) Predict what will happen to the seedling if it stays in the dark after the seed's store of starch is used up. (1 point)
A full-credit answer: Once the starch is gone the seedling has no energy input at all: no food, and no light in the dark. It can no longer remake ATP, so the work of building new cells and pumping materials stops, its cells lose their order, and it dies.
Check the box for each point your answer earns
Accept "it stops growing and dies" with the reason that it can no longer make ATP. Do not award the point for "it stops growing" alone, or for a prediction that it keeps living on light it is not receiving.
Common slip: Predicting only that growth slows or stops. The prediction has to follow the chain to its end: no input, no ATP, order lost, death.
(d) Justify your prediction using what living systems must do with energy to stay alive. (1 point)
A full-credit answer: A living system stays ordered only by taking in more energy than it loses. Order costs energy every moment, paid for by ATP hydrolysis coupled to the work of building and pumping, and heat leaves at every transfer. In the dark, with the starch gone, the seedling's input is zero while its losses go on, so the order cannot be paid for; a significant loss of order, or an interruption of the energy flow, results in death.
Check the box for each point your answer earns
Accept a justification built on "input must exceed loss" or on the two laws applied to the seedling. Do not award the point for restating the prediction, or for a justification that has the seedling creating energy from its own tissues.
Common slip: Justifying with "it has no energy" and stopping. The point needs the reason order depends on energy: work must be paid for continuously and heat is always leaving, so input must exceed loss.
(a) Describe what happens in arrow 1, naming the reactants and the products. (1 point)
A full-credit answer: In arrow 1, ATP hydrolysis, ATP reacts with water: ATP + H₂O → ADP + Pi. The outermost phosphate group is removed, leaving ADP, adenosine with two phosphates, and one free inorganic phosphate, and the reaction releases energy.
Check the box for each point your answer earns
Accept "ATP is split by water into ADP and a phosphate". Do not award the point for products named as "ADP and energy" with no phosphate, or for ATP described as losing all three phosphates.
Common slip: Leaving water out of the reactants, or the phosphate out of the products. Hydrolysis uses water, and the phosphate that leaves is a product, Pi.
(b) Explain why the reaction in arrow 1 releases energy that the pump can use. (1 point)
A full-credit answer: The reaction releases energy because its products, ADP and inorganic phosphate, hold less energy than ATP and water did. The pump can use that energy only because the hydrolysis is coupled to its work: the outer phosphate is transferred onto the pump, phosphorylating it, and the pump changes shape and pushes Na⁺ out.
Check the box for each point your answer earns
Accept "the products sit lower in energy than the reactants" for the source. Do not award the point for "energy stored in the high-energy phosphate bond is released when the bond breaks".
Common slip: Saying energy was stored in the bond to the outer phosphate and came out when the bond broke. Breaking a bond takes energy in; the release comes from the whole reaction, whose products hold less energy than its reactants.
(c) Represent arrow 2 as an equation, in words or symbols, and state what supplies the energy it needs. (1 point)
A full-credit answer: Arrow 2 is ADP + Pi + energy → ATP + H₂O, the reverse of hydrolysis. Because ATP holds more energy than ADP and Pi, remaking it needs an input of energy, and the cell supplies it from the energy released as it breaks down food molecules such as glucose.
Check the box for each point your answer earns
Accept the equation without water. Do not award the point for an equation with no energy input, or for the energy coming from oxygen, from Pi, or from the pump.
Common slip: Writing the equation with no energy term. Arrow 2 runs uphill; without the energy from food it does not happen.
(d) Explain how the model, together with the look-alike experiment, relates to the principle that a living system needs a continuous input of energy. (1 point)
A full-credit answer: The look-alike binds the pump but is never hydrolyzed, so no energy is released and nothing is coupled to the pump's shape change; the pump stops even though ATP-shaped molecules are present. What pays for the pump is the hydrolysis itself, and a cell holds only seconds' worth of ATP, so arrow 2 must run all the time, charging ADP back up with energy from food. The pump, and with it the cell's ion gradients and order, are kept only while energy keeps flowing in from outside.
Check the box for each point your answer earns
Accept an answer that links the pump stopping to "no hydrolysis, no energy" and the cycle to "ATP must be remade from food all the time". Do not award the point for restating that the pump stopped, or for treating ATP as a long-term store of energy.
Common slip: Stopping at "the pump stops because the look-alike is not ATP". The point needs the chain: no hydrolysis, no energy released, no coupled shape change; and then why the cell must keep remaking ATP from food.