Unit 3 · Unit 3 end-of-unit test (also the test-out)
Suggested time: about 80 minutes. Answer everything, then press Submit the test to see the feedback and scoring guides.
Penicillinase, an enzyme made by some bacteria, speeds up the reaction penicillin + water → an inactive product. The figure shows the energy profile of the reaction with penicillinase present. Penicillinase lowers the activation energy of the reaction by 42 kJ/mol.
Which of the following is the activation energy of the reaction with no enzyme present?
A bacterium in river mud makes an enzyme that speeds up the breakdown of one kind of resin that washes into the river from a factory. Researchers give the enzyme four other molecules, one at a time.
Which of the following molecules is the enzyme most likely to break down as well?
A student wants to find out whether catalase from celeriac or from guava releases oxygen faster from hydrogen peroxide. She puts a cube of celeriac into a tube of hydrogen peroxide at 20 °C and an equal cube of guava into an equal tube of the same peroxide at 35 °C. A third tube holds peroxide with no tissue. She collects the oxygen from each tube for 3 minutes.
Which of the following changes would make the comparison a fair test?
Students test whether the concentration of cobalt ions changes the rate at which an enzyme from pond bacteria breaks down a sugar.
Which of the following is the null hypothesis for this test?
Cells lining the gut of a fish make an enzyme that breaks down a toxin in the algae the fish eats. A student proposes that the fish's cells control how fast the toxin is broken down by controlling how much of the enzyme they make.
Which of the following observations would support the student's proposal?
An enzyme from a glacier bacterium is held at 0 °C. Its rate falls from 16 μmol/min to 1.5 μmol/min.
Which of the following results would show that the cold slowed the enzyme rather than denaturing it?
The fluid inside a plant cell's vacuole holds 100 times the concentration of hydrogen ions (H⁺) of the cell's cytosol. The cytosol is at pH 7.5.
Which of the following is the pH of the fluid inside the vacuole?
A student gives a fixed amount of a purified enzyme its substrate at rising concentrations, with every tube at the enzyme's optimal temperature of 37 °C. Above 22 mmol/L of substrate, the initial rate stays at 64 μmol/min however much more substrate she adds.
Which of the following changes would raise the initial rate above 64 μmol/min?
A researcher measures a liver enzyme's rate at a low and a high concentration of its substrate, with no drug and with each of three drugs, J, K and M. The amount of enzyme, the temperature and the pH were the same in every test. The rates, at 4 μM and at 400 μM of substrate, are in the table.
Which of the drugs is a competitive inhibitor?
The table gives the optimal temperature and the optimal pH of four enzymes that digest protein. Human stomach fluid is at 37 °C and about pH 2.
Which of the four enzymes could digest protein in human stomach fluid?
Twenty-five tubes of an enzyme from a cave bacterium, all at 30 °C, released product at a mean rate of 20.0 μmol/min. The standard deviation of the 25 readings is 1.5 μmol/min.
Which of the following are the two ends of the ±2SE error bar on this mean?
Students measured the rate of an enzyme from a bacterium that breaks down fuel oil at three concentrations of chromium ions, five tubes at each, with temperature and pH the same in every tube. The graph shows the three means with error bars representing ±2SE.
For which of the following comparisons is the null hypothesis of no difference in rate rejected?
A class measures an enzyme's rate in five tubes at each of two temperatures. The two ±2SE error bars overlap. The class wants to know whether the two rates differ.
Which of the following changes would make the standard error of each mean smaller, if the spread of the readings stays the same?
A working muscle cell holds 11 mmol of ATP per liter of cytosol and hydrolyzes 3.5 mmol of ATP per liter of cytosol every second. Its ATP level stays steady.
How much ATP does the cell remake from ADP and Pi each minute, per liter of cytosol?
The table gives, for three animals, the energy transferred from their food in a day and the energy captured in ATP.
Which animal captured in ATP the largest share of the energy it transferred from its food?
An adult pony has kept the same body mass for a year. A student says: “Its mass is steady, so the pony has no need to take in energy.” The student is wrong.
Which of the following is the reason the student is wrong?
The figure shows a branched pathway in a cell. Y is the reactant of two enzymes: E3 makes Z from Y, and E4 makes V from Y. W keeps arriving, and E4 is far from saturated. A drug stops E3 working.
Which of the following happens to the amounts of Y, Z and V?
An aquarium plant is sealed in a jar with an oxygen sensor. In bright light the jar's oxygen reading rises by 22 mL an hour. In that light the plant's true rate of photosynthesis is 35 mL of oxygen an hour. Respiration uses oxygen at the same rate in light and dark.
Which of the following is the plant's rate of respiration?
Geologists find fossils generally taken to be cyanobacteria in a rock layer 3.1 billion years old. Oxygen from photosynthesis began to build up in the air and sea about 2.4 billion years ago.
Which of the following would the geologists expect to find among the iron minerals of the 3.1-billion-year-old layer?
Researchers measure the oxygen release and the sugar output of isolated chloroplasts under four treatments. In one treatment, in the first minute, the chloroplasts went on releasing oxygen at their normal rate, but their sugar output fell.
Which of the following treatments gives this result?
A mitochondrion, a chloroplast and an aerobic bacterium each pump protons across a membrane with an electron transport chain. Each row of the table names one space for each of the three.
Which row names the spaces the protons are pumped into?
Biologists claim that the chloroplast descends from a cyanobacterium taken inside a eukaryotic cell long ago.
Which of the following findings would count against this claim?
Electrons are passing along the electron transport chain of a respiring mitochondrion.
Compared with the matrix, which of the following describes the intermembrane space?
NADH hands its electrons to the first protein of the electron transport chain. FADH₂ hands its electrons to a protein further along the chain.
Compared with the electrons from one NADH, what do the electrons from one FADH₂ do?
In a muscle fiber short of oxygen, an enzyme turns pyruvate into lactate. A drug blocks that enzyme. Within a minute, glycolysis in the fiber stops.
Why does glycolysis stop?
A yeast culture with plenty of oxygen makes 84 mmol of ATP an hour and uses 2.8 mmol of glucose an hour. Its oxygen is cut off, and the culture goes on making 84 mmol of ATP an hour by fermenting.
About how much glucose does the fermenting culture use an hour?
Yeast cells in a sealed flask with no oxygen are fed glucose in which every carbon atom is the heavy form ¹³C. The yeast ferment the glucose.
What share of the ¹³C ends up in the carbon dioxide the yeast give off?
Students measure the oxygen an aquarium plant releases in 20 minutes at five light intensities, five tubes at each, and calculate the standard error of each mean. The means are in the table.
Which of the following is the correct way to draw the graph?
Researchers set up two tubes, each with plenty of NADH, ADP, Pi and dissolved oxygen. In tube 1 the proteins of the electron transport chain and ATP synthase are set in the membrane of sealed vesicles. In tube 2 the same proteins float free in the solution, with no membrane. The table gives the ATP each tube makes.
Why is no ATP made in tube 2?
A researcher gives isolated mitochondria the two-carbon fragment that pyruvate oxidation leaves, with NAD⁺, FAD, ADP and Pi and no oxygen. The mitochondria release carbon dioxide, load NAD⁺ to NADH and FAD to FADH₂, and make a little ATP.
Which of the following stages is taking place in the mitochondria?
(a)(i) Describe how the enzyme's active site holds its substrate. (1 point)
A full-credit answer: The substrate binds in the active site only if its shape fits the pocket.
Its charges must also match the charges on the R groups lining the pocket.
Check the box for each point your answer earns
Does not earn: 'the substrate binds to the enzyme' with no mention of fit or charge.
Common slip: Saying the substrate binds 'anywhere on the enzyme': only the pocket holds it.
(a)(ii) Explain why a very small amount of the enzyme can turn the whole cut surface brown. (1 point)
A full-credit answer: The enzyme is a catalyst, so the reaction leaves it unchanged.
So each enzyme molecule acts again and again on new substrate molecules.
A small amount of enzyme therefore turns a great deal of substrate into pigment.
Check the box for each point your answer earns
Accept: 'a catalyst is not consumed' with the consequence that it keeps working.
Common slip: Saying the enzyme 'is used up slowly': a catalyst is not used up at all.
(b)(i) Identify the control group for the scientists' experiment. (1 point)
A full-credit answer: The untreated group: the extract at pH 7 with nothing added.
Check the box for each point your answer earns
Common slip: Naming a control variable, such as the temperature, instead of the control group.
(b)(ii) Justify why the scientists included the neutralized group, the extract with the acid added and then brought back to pH 7. (1 point)
A full-credit answer: The neutralized group has the acid present but not the low pH.
If its rate matches the untreated group's, the acid itself does nothing to the enzyme.
So any fall in the acid group can be credited to the low pH, not to something else the acid adds to the extract.
Check the box for each point your answer earns
Accept: 'to show that the acid on its own, at pH 7, does not change the rate'; 'to show that the acid's effect depends on the pH, not on the acid having been added'.
Does not earn: 'it is a control' or 'to have something to compare with' without naming what the neutralized group rules out.
Common slip: Saying only 'it is a second control': the point is what the neutralized group rules out.
(b)(iii) Identify the independent variable in the scientists' experiment. (1 point)
A full-credit answer: The treatment of the extract: whether the acid is added and the pH the extract is left at.
Check the box for each point your answer earns
Accept: 'the pH of the extract' or 'whether the acid was added and whether it was neutralized'.
Common slip: Naming the rate of pigment formation, which is the dependent variable.
(c) Based on Figure 1, describe the effect on the rate of pigment formation of the acid at pH 4 compared with the acid brought back to pH 7 (the neutralized group). (1 point)
A full-credit answer: The acid at pH 4 lowers the rate: the acid group's mean is about 2.3 μmol/min against about 7.7 μmol/min in the neutralized group.
The two error bars do not overlap, so the difference is shown.
The neutralized group's bar overlaps the untreated group's, so the acid at pH 7 is not shown to change the rate.
Check the box for each point your answer earns
Accept: the direction with values read from the figure; 'the neutralized group's bar overlaps the untreated group's, so no difference is shown there' as the comparison.
Does not earn: 'the rates are different' with no direction.
Common slip: Reporting only the means without saying whether the bars overlap.
(d)(i) Predict the rate of pigment formation when a tube from the acid group is brought back to pH 7 after ten minutes at pH 4. (1 point)
A full-credit answer: The rate rises back to close to the untreated group's rate, about 8 μmol/min.
Check the box for each point your answer earns
Accept: 'returns to normal' or 'rises to about 7 to 9 μmol/min'.
Common slip: Predicting that the rate stays low: the fold was never lost.
(d)(ii) Justify your prediction in part (d)(i). (1 point)
A full-credit answer: At pH 4 the folding test found 89 of every 100 enzyme molecules still folded.
So the low pH only changed the charges on the R groups lining the active site; the fold held.
Back at pH 7 the R groups regain their charges, so the substrate binds well again and the rate returns.
Check the box for each point your answer earns
Does not earn: 'the enzyme was not denatured' with no link to the charges returning at pH 7.
Common slip: Saying the enzyme 'refolds' at pH 7: it never unfolded.
(d)(iii) Explain why a cut persimmon kept in a refrigerator browns more slowly than one left on a counter. (1 point)
A full-credit answer: In the refrigerator the molecules of enzyme and substrate move more slowly.
So they collide less often and with less energy.
So fewer collisions succeed each second, and the pigment forms more slowly.
Check the box for each point your answer earns
Does not earn: 'the cold denatures the enzyme' (cold slows; it does not denature).
Common slip: Saying the cold denatures the enzyme: cooling slows it, and the rate returns on warming.
(a) Describe the advantage to a cell of making ATP by oxidative phosphorylation rather than by glycolysis alone. (1 point)
A full-credit answer: Oxidative phosphorylation gives about 30 ATP per glucose.
Glycolysis alone gives only 2 ATP per glucose.
So the cell gets far more ATP from each glucose it breaks down.
Check the box for each point your answer earns
Accept: 'about fifteen times as much ATP from each glucose'.
Common slip: Saying oxidative phosphorylation 'is faster': the advantage is the yield per glucose.
(b) Identify the two treatment groups that served as controls in the researchers' experiment. (1 point)
A full-credit answer: Groups 3 and 4: the broths from the bacteria that do not make compound U, at the high and the low concentration.
Check the box for each point your answer earns
Common slip: Naming only group 4, or naming the low-concentration groups 2 and 4.
(c) Based on the information in both tables, predict the treatment group likely to have the greatest rate of oxygen use of the four. (1 point)
A full-credit answer: Group 1, the cells given the broth from bacteria that make compound U at its high concentration.
Check the box for each point your answer earns
Common slip: Choosing group 3, the high-concentration broth with no compound U.
(d) The researchers claim that cells in which protons leak back past ATP synthase will show a fall in ATP production. Support the claim. (1 point)
A full-credit answer: The chain pumps protons into the intermembrane space, and ATP synthase makes ATP as protons flow back through it.
With compound U, protons leak back through the membrane instead of through ATP synthase.
So fewer protons flow through ATP synthase, and it makes less ATP.
The proton gradient's energy leaves as heat instead.
Check the box for each point your answer earns
Does not earn: 'the cells make less ATP' restated with no link to the flow through ATP synthase.
Common slip: Saying the leak stops the chain: the chain speeds up and uses more oxygen, while ATP falls.
(a) Describe a characteristic of chlorophyll that lets the light reactions capture light energy. (1 point)
A full-credit answer: Chlorophyll absorbs blue and red light strongly.
The light it absorbs boosts one of its electrons to a higher energy level, and the photosystem passes that electron on.
Check the box for each point your answer earns
Accept either the absorption or the boosted electron.
Common slip: Saying chlorophyll 'is green' or 'reflects green light': the reflected light is not captured.
(b) A drug stops the enzyme of the Calvin cycle that fixes carbon dioxide. Based on Figure 1, explain what happens to the amounts of ATP and NADPH in the stroma in the first minute, with the light bright and carbon dioxide plentiful. (1 point)
A full-credit answer: With its fixing enzyme stopped, the Calvin cycle stops, so it uses no ATP or NADPH along arrows 1 and 2.
The light reactions go on making ATP and NADPH.
So both pile up in the stroma.
Check the box for each point your answer earns
Does not earn: 'ATP and NADPH fall' or 'the light reactions stop' (the light is unchanged).
Common slip: Saying ATP and NADPH fall because sugar output falls: they are used less, so they build up.
(c) Using Figure 1, identify the molecule that carries electrons from the light reactions to the Calvin cycle. (1 point)
A full-credit answer: NADPH, arrow 2.
Check the box for each point your answer earns
Common slip: Naming ATP, which carries energy but not electrons; or NADP⁺, the emptied carrier returning.
(d) Based on Figure 1, explain how a drug that plugs the channel of ATP synthase in the thylakoid membranes stops sugar being made, even in bright light with carbon dioxide plentiful. (1 point)
A full-credit answer: Protons pumped into the thylakoid space can no longer flow back into the stroma through ATP synthase.
So ATP synthase makes no ATP, and arrow 1 stops.
The Calvin cycle needs that ATP to build sugar from carbon dioxide.
So carbon fixation stops and no sugar is made.
Check the box for each point your answer earns
Accept with or without any statement about NADPH or the proton gradient: the point rests on the ATP link alone.
Does not earn: 'no ATP is made' with no link to the Calvin cycle's need for it.
Common slip: Saying the drug stops light being absorbed: the photosystems still capture light; the ATP step is what fails.