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End-of-topic test: Phylogeny

Unit 7 · Topic 7.9 end-of-topic test

Suggested time: about 48 minutes. Answer everything, then press Submit the test to see the feedback and scoring guides.

Answer every question. For each multiple-choice question, pick one option. When you have answered every question, press Submit the test; the feedback then gives the reasoning for each. For the free-response questions, write one short sentence for each step of your reasoning, each on its own line, and make every link clear (so, because, therefore). That is what the exam’s ‘paragraph form’ means for you: linked sentences, not bullet points. Then open the scoring guide and mark your own work against it. Every count of DNA differences in this test is imagined for the question; the trees show real relationships.
Question 1
A cladogram of four trees, hickory, pecan, walnut, sycamore, drawn on its side with the root at the left and the tips down the right; the branch points drawn as dots; a circled letter J sits beside one point of the drawinghickorypecanwalnutsycamoreJ
A cladogram of four trees, drawn on its side with the root at the left; the letter J marks one point.

The cladogram shows four trees. The letter J marks one point of the drawing.

What is the marked point?

Question 2
A cladogram of 5 marsupials, bandicoot, bilby, quoll, quokka, possum; the root at the bottom and the tips level along the top; the branch points drawn as dots; a short arrow points at one of the dotsbandicootbilbyquollquokkapossum
A cladogram of five marsupials; an arrow marks one node.

The cladogram shows five marsupials. An arrow marks one node.

Of which marsupials is the marked node the most recent common ancestor?

Question 3
A cladogram of 4 reptiles, boa, cobra, viper, agama; the root at the bottom and the tips level along the top; the branch points drawn as dotsboacobraviperagama
A cladogram of four reptiles.

The cladogram shows four reptiles.

Which two are the most closely related?

Question 4
A cladogram of 7 animals, lancelet, stingray, gar, bonito, swordfish, marlin, sailfish; the root at the bottom and the tips level along the top; the branch points drawn as dotslanceletstingraygarbonitoswordfishmarlinsailfish
A cladogram of seven animals.

The cladogram shows seven animals.

How many splits does the cladogram record?

Question 5
A tree of 4 plants, daffodil, cardamom, ginger, turmeric, drawn on its side with the root at the left and the tips down the right; a scale along the bottom runs from 0 at the right to 40 at the left, labeled number of DNA differences; the branch points drawn as dots010203040number of DNA differencesdaffodilcardamomgingerturmeric
Four plants drawn on a tree with a scale of DNA differences along the bottom; the counts are imagined.

The drawing shows four plants; the counts on its scale are imagined.

Which of the following does this drawing show that a cladogram of the same four plants leaves out?

Question 6
A table with 4 columns headed lacewing, stink bug, spittlebug, treehopper (the lacewing's column shaded), and 4 rows: six legs: yes, yes, yes, yes; piercing, sucking mouthparts: no, yes, yes, yes; hind legs built for jumping: no, no, yes, yes; a gland that gives off a stink: no, yes, no, no; each cell reads yes or nolacewingstink bugspittlebugtreehoppersix legsyesyesyesyespiercing, sucking mouthpartsnoyesyesyeshind legs built for jumpingnonoyesyesa gland that gives off a stinknoyesnono
Four characters of four insects; the lacewing is the outgroup.

The table gives four characters of four insects. The lacewing is the outgroup.

Which character is an ancestral character for these four insects?

Question 7
A table with 4 columns headed chiton, abalone, conch, murex (the chiton's column shaded), and 4 rows: a soft body with a muscular foot: yes, yes, yes, yes; a single coiled shell: no, yes, yes, yes; a notch or tube for a breathing siphon: no, no, yes, yes; a row of holes along the shell: no, yes, no, no; each cell reads yes or nochitonabaloneconchmurexa soft body with a muscular footyesyesyesyesa single coiled shellnoyesyesyesa notch or tube for a breathing siphonnonoyesyesa row of holes along the shellnoyesnono
Four characters of four molluscs; the chiton is the outgroup.

The table gives four characters of four molluscs. The chiton is the outgroup.

Which of these molluscs descend from the ancestor in which the notch or tube for a breathing siphon appeared?

Question 8
A cladogram of 4 primates, capuchin, marmoset, howler monkey, tarsier; the root at the bottom and the tips level along the top; the branch points drawn as dotscapuchinmarmosethowler monkeytarsier
A cladogram of four primates.

The cladogram shows four primates.

Which primate is the outgroup?

Question 9
A cladogram of 4 fishes, sawfish, wahoo, coelacanth, lungfish; the root at the bottom and the tips level along the top; the branch points drawn as dots; three short bars cross three of the branches, each named beside it: a skeleton of bone, fins on a fleshy lobe, a lungsawfishwahoocoelacanthlungfisha skeleton of bonefins on a fleshy lobea lung
A cladogram of four fishes with three characters marked where each arose.

The cladogram shows four fishes, with three characters marked where each arose. Biologists then find a fossil fish.

Which set of characters would place the fossil as the coelacanth’s closest relative on this cladogram?

Question 10
A cladogram of 4 birds, dove, guineafowl, junglefowl, peafowl; the root at the bottom and the tips level along the top; the branch points drawn as dots; circled letters J, K, L, M, N and P sit beside six of the branches. Below it, A table with 4 columns headed dove, guineafowl, junglefowl, peafowl (the dove's column shaded), and 4 rows: feathers: yes, yes, yes, yes; a short, stout, curved bill: no, yes, yes, yes; a bony helmet on the head: no, yes, no, no; a fleshy comb on the head: no, no, yes, no; each cell reads yes or nodoveguineafowljunglefowlpeafowlJKLMNPdoveguineafowljunglefowlpeafowlfeathersyesyesyesyesa short, stout, curved billnoyesyesyesa bony helmet on the headnoyesnonoa fleshy comb on the headnonoyesno
A cladogram of four birds with six lettered branches, and a table of four characters; the dove is the outgroup.

The cladogram shows four birds; the dove is the outgroup. The letters J to P mark six of its branches. The table gives four characters of the birds.

On which lettered branch did the short, stout, curved bill arise?

Question 11
A table of the number of DNA positions that differ between each pair of 4 kinds, sandpiper, phalarope, stilt, loon: phalarope and sandpiper 5; stilt and sandpiper 11; loon and sandpiper 20; stilt and phalarope 12; loon and phalarope 21; loon and stilt 22sandpiperphalaropestiltphalarope5stilt1112loon202122
The number of DNA positions at which each pair of four birds differs; the counts are imagined.

Biologists compare one stretch of DNA in four birds and count the positions at which each pair differs, as the table shows. The counts are imagined.

Which two birds join at the node nearest the tips?

Question 12
A table of the number of DNA positions that differ between each pair of 5 kinds, rhubarb, sorrel, buckwheat, quinoa, lilac (every pair's value written twice): sorrel and rhubarb 2; buckwheat and rhubarb 6; quinoa and rhubarb 11; lilac and rhubarb 19; buckwheat and sorrel 7; quinoa and sorrel 12; lilac and sorrel 20; quinoa and buckwheat 12; lilac and buckwheat 20; lilac and quinoa 21rhubarbsorrelbuckwheatquinoalilacrhubarb261119sorrel271220buckwheat671220quinoa11121221lilac19202021
The number of DNA positions at which each pair of five plants differs, every count written twice; the counts are imagined.

Biologists compare one stretch of DNA in five plants and count the positions at which each pair differs, as the table shows; every pair’s count is written twice, and the counts are imagined.

After joining the two most closely related plants, which plant do they add to the tree next?

Question 13

Biologists compare one stretch of DNA in two kinds of bustard, a large ground bird, and find 30 differences. No fossil dates the split between the two. The count is imagined.

Which one further piece of information would let them estimate how long ago the two lineages split?

Question 14

Fossils date the split between two kinds of gopher at 6 million years ago. The same stretch of DNA differs between the two at 39 positions. The count and the date are imagined.

What is the rate at which the differences built up?

Question 15

Biologists compare one stretch of DNA in three kinds of hyrax, a rabbit-sized African mammal. The rock hyrax and the bush hyrax differ at 8 positions, and fossils date their split at 2 million years ago. The rock hyrax and the tree hyrax differ at 22 positions, and no fossil dates their split. The counts and the date are imagined.

How long ago did the rock hyrax’s lineage and the tree hyrax’s split?

Question 16
Two cladograms of the same four birds, honeyeater, sunbird, fairywren, oriole, one above the other, each with the root at the bottom and the tips along the top; the upper is headed Cladogram J, built from bill shape and leg length; the lower is headed Cladogram K, built from nine genes; the two place the birds differentlyCladogram J: built from bill shape and leg lengthhoneyeatersunbirdfairywrenorioleCladogram K: built from nine geneshoneyeaterfairywrensunbirdoriole
Two cladograms of the same four birds: J from bill shape and leg length, K from nine genes.

Biologists build two cladograms of the same four birds. Cladogram J is built from bill shape and leg length. Cladogram K is built from nine genes. The honeyeater and the sunbird both have long, curved bills for reaching the nectar in flowers, and the two cladograms place them differently.

Which cladogram should biologists accept?

Question 17
Above, a cladogram of four trees, cypress, hornbeam, redwood, linden, headed the working cladogram, with the root at the bottom. Below, A table of the number of DNA positions that differ between each pair of 4 kinds, cypress, redwood, hornbeam, linden: redwood and cypress 3; hornbeam and cypress 20; linden and cypress 21; hornbeam and redwood 21; linden and redwood 22; linden and hornbeam 9The working cladogramcypresshornbeamredwoodlindencypressredwoodhornbeamredwood3hornbeam2021linden21229
Above, the working cladogram of four trees; below, the number of DNA positions at which each pair differs; the counts are imagined.

Biologists draw a working cladogram of four trees, as the upper drawing shows. They then compare one stretch of DNA in the four and count the positions at which each pair differs, as the table shows. The counts are imagined.

Which change to the working cladogram does the DNA evidence support?

Question 18
A tree of 5 cats, serval, caracal, margay, puma, jaguarundi, drawn on its side with the root at the left and the tips down the right; a scale along the bottom runs from 0 at the right to 10 at the left, labeled millions of years ago; the branch points drawn as dots012345678910millions of years agoservalcaracalmargaypumajaguarundi
A phylogenetic tree of five cats drawn on its side, with a scale in millions of years ago along the bottom; the dates are rounded to the nearest million.

The phylogenetic tree shows five cats. Its scale gives the time since each split in millions of years, rounded to the nearest million; different studies give somewhat different dates.

Which two cats could be switched while every relationship the tree shows stays the same?

Question 19
A cladogram of 5 plants, cashew, mango, pistachio, sumac, lychee; the root at the bottom and the tips level along the top; the branch points drawn as dots; a short arrow points at one of the dotscashewmangopistachiosumaclychee
A cladogram of five plants; an arrow marks one node.

The cladogram shows five plants. An arrow marks one node.

Which two lineages began at the marked node?

How to tackle the free-response questions. Read the verb first: describe asks what you see or know; explain asks why or how, so name the mechanism; predict asks what will happen and why; justify asks for the evidence that supports a claim. Each point is earned by one idea, stated in a sentence that names the thing and the mechanism. Extra words earn nothing; a wrong extra can lose the point. If there is a figure or table, use what it shows. When you finish, check the box for each point your answer earns and compare your sentences with the full-credit answer.
Free response 1 · Analyze Model or Visual Representation · 4 points
Biologists compare one stretch of DNA in five birds: a hornbill, a hoopoe, a roller, a trogon and a turaco. For each pair they calculate the percent of positions that differ, the percent divergence, as the table shows; every pair’s value is written twice. Fossils date the split between the hornbill’s lineage and the hoopoe’s at 4 million years ago. The template below the table is a cladogram with the turaco placed and four blank tips lettered J to M. The percentages and the date are imagined for this question.
Above, A table of the percent divergence of one stretch of DNA between each pair of 5 kinds, hornbill, hoopoe, roller, trogon, turaco (every pair's value written twice): hoopoe and hornbill 3.6; roller and hornbill 6.8; trogon and hornbill 10.2; turaco and hornbill 15.1; roller and hoopoe 7.0; trogon and hoopoe 10.4; turaco and hoopoe 15.3; trogon and roller 10.5; turaco and roller 15.4; turaco and trogon 15.6. Below, headed Template, a cladogram drawn on its side with the root at the left: five tips down the right, the top four blank and lettered J, K, L, M from the top, the bottom one labeled turaco; a short arrow points at one of the branch pointshornbillhoopoerollertrogonturacohornbill3.66.810.215.1hoopoe3.67.010.415.3roller6.87.010.515.4trogon10.210.410.515.6turaco15.115.315.415.6TemplateJKLMturaco
Above, the percent divergence of one stretch of DNA between each pair of five birds, every value written twice; below, a cladogram template with the turaco placed and four blank tips lettered J to M; an arrow marks one node.

(a) Calculate the rate of percent divergence per million years between the hornbill and the hoopoe. Give your answer to two decimal places; the same value to one decimal place is also accepted. (1 point)

% per million years

Write down the values in the question:

percent divergence, hornbill–hoopoe = 3.6%
time since the split = 4 million years

Write down the equation:

rate=percent divergencetime since the split

Substitute the values into the equation:

rate=3.64=0.90% per million years

A full-credit answer: The hornbill and the hoopoe differ at 3.6% of positions, and fossils date their split at 4 million years ago.
3.6 ÷ 4 = 0.90% per million years.

(b) Determine which bird belongs at each of the blank tips J, K, L and M of the template. (1 point)

A full-credit answer: J and K: the hornbill and the hoopoe, in either order. Their divergence, 3.6%, is the smallest in the table, so they join at the node nearest the tips.
L: the roller, at 6.8% and 7.0% from the pair, the next smallest.
M: the trogon, at 10.2% to 10.5% from those three.

Check the box for each point your answer earns

(c) Justify the placement of the turaco as the outgroup. (1 point)

A full-credit answer: The turaco’s divergence from every other bird is the largest in the table: 15.1% to 15.6%.
The bird most different from all the others is the least closely related to them.
So its lineage is the first off the root: the outgroup.

Check the box for each point your answer earns

(d) Identify every bird that descends from the node marked with the arrow. (1 point)

A full-credit answer: The arrowed node is the one where L’s line joins the J–K pair.
Three tips rise from it: J, K and L.
So the hornbill, the hoopoe and the roller descend from it.

Check the box for each point your answer earns

Free-response score: 0 of 4
Free response 2 · Analyze Model or Visual Representation · 4 points
Succulent plants store water in thick leaves or stems. Biologists studying five plants build two cladograms: Figure A from the form of the leaves and stems, and Figure B from DNA sequences. The table gives three features of the leaves, stems and flowers that were used to build Figure A. The spurge is a desert spurge (Euphorbia).
Two cladograms of the same five plants, aloe, agave, spurge, peony, jasmine, one above the other, each with the root at the bottom: Figure A, built from leaf and stem form, and Figure B, built from DNA sequences; on Figure B circled letters J, K, L, M, N, P, Q and R sit beside eight branches. Below them, A table with 5 columns headed aloe, agave, spurge, peony, jasmine, and 3 rows: thick, water-storing leaves or stems: yes, yes, yes, no, no; flower parts in threes: yes, yes, no, no, no; milky sap: no, no, yes, no, no; each cell reads yes or noFigure A: built from leaf and stem formaloeagavespurgepeonyjasmineFigure B: built from DNA sequencesaloeagavespurgepeonyjasmineJKLMNPQRaloeagavespurgepeonyjasminethick, water-storing leaves or stemsyesyesyesnonoflower parts in threesyesyesnononomilky sapnonoyesnono
Figure A, a cladogram of five plants built from leaf and stem form; Figure B, a cladogram of the same plants built from DNA sequences, with eight lettered branches; and a table of three features of the five plants.

(a) Describe how a scientist would use a comparison of DNA sequences from different plants to suggest the most likely evolutionary relationships among them. (1 point)

A full-credit answer: The scientist compares the same stretch of DNA in each plant and counts the positions at which each pair differs.
Fewer differences mean a more recent common ancestor.
So the pair with the fewest differences is placed as the closest relatives, and the plant most different from all the others as the outgroup.

Check the box for each point your answer earns

(b) Based on Figures A and B, explain why the spurge is likely to be more closely related to the peony than to the aloe. (1 point)

A full-credit answer: In Figure B the spurge’s and the peony’s lines join at a node just below them; the aloe’s line joins the spurge’s only at the root.
Figure B is built from DNA: thousands of independent characters that a shared way of life almost never makes alike.
So the DNA cladogram is the more reliable one, and it places the spurge with the peony.

Check the box for each point your answer earns

(c) Using Figure B, identify the lettered branch or branches on which thick, water-storing leaves or stems arose. (1 point)

A full-credit answer: The aloe and the agave both have the character, so it arose once on the branch below their shared node: L.
The spurge has it, but the peony beside it does not, so it arose again on the spurge’s own branch: M.
So the character arose on branches L and M.

Check the box for each point your answer earns

(d) Based on Figure A, explain why a feature found only in the agave and the peony would more likely have arisen separately in the two lineages (convergent evolution) than have been inherited from one common ancestor. (1 point)

A full-credit answer: On Figure A the only ancestor the agave and the peony share is the root.
The aloe, the spurge and the jasmine descend from the root too, and they lack the feature.
One origin at the root would need three later losses: four events.
Two separate origins are two events, the simpler explanation.

Check the box for each point your answer earns

Accept one of the following: other plants that descend from the same common ancestor (the aloe, the spurge, the jasmine) lack the feature; or two separate origins are fewer events than one origin in the common ancestor followed by losses in the aloe, the spurge and the jasmine.

Free-response score: 0 of 4
Feedback and scoring guides appear after you submit.
Multiple choice checked: 0 of 19 correct.